INDIVIDUAL MCP TOOL

search_entities

Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym.

mtor-atlas.orgnone authenticationAvailability not checked

LIVE ENDPOINT

https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp

No auth detected

Connect to this endpoint to inspect the live schema for search_entities and invoke it with your own arguments.

{}

Inferred read-only · medium confidence · heuristic, not a guarantee.

No write-capable action terms were found; this is not proof that invocation has no side effects.

CONNECT WITH APPROVAL

Review this server and its permissions before adding it. Secret placeholders must be set locally.

Codex

~/.codex/config.toml

[mcp_servers.mtor-atlas]
url = "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
enabled = true

Claude Code

.mcp.json

{
  "mcpServers": {
    "mtor-atlas": {
      "type": "http",
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}

Claude Desktop

Settings → Connectors → Add custom connector

Name: mtor-atlas
Remote MCP URL: https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp

Add this remote URL as a custom connector in Claude Desktop. Availability depends on the user plan and workspace policy.

Cursor

.cursor/mcp.json

{
  "mcpServers": {
    "mtor-atlas": {
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}

Visual Studio Code

.vscode/mcp.json

Add to Visual Studio Code

{
  "servers": {
    "mtor-atlas": {
      "type": "http",
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}

Generic MCP

Client-specific MCP configuration

{
  "name": "mtor-atlas",
  "transport": "streamable-http",
  "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
}

MCP Inspector

Run the official MCP Inspector locally and enter the indexed Streamable HTTP endpoint.

atlas_about — Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset.
search_studies — Search the curated studies by keywords (title, finding, authors, journal, model system), optionally filtered by evidence code, a linked entity (gene, drug, disease.
get_study — Full record for one study by Atlas ID (e.
get_entity — One entity (gene/protein, complex, drug, disease, process.
find_relations — Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1").
get_relation — One pathway relation by ID (e.
evidence_between — Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies.
find_contradictions — Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence.