Databases

mtor-atlas.org

Provides search and retrieval over a curated biomedical studies atlas, including study records, evidence codes, and linked entities such as genes, drugs, and diseases.

1 endpoint11 known toolsFirst detected October 1, 2026Last detected October 6, 2026

ENDPOINT 1

https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp

No auth detected

MCP server metadata

Name: mtor-atlas
Version: 1.2.1

Capabilities

tools.listChanged

Server instructions

Oliver's mTOR Atlas is a curated, evidence-labelled corpus of mTOR research (studies, entities, signed pathway relations, open questions). How to use it well: - Every study has an evidence code: S synthesis of human data, H human study, A animal model, M molecular/in vitro, R review, PP preprint, RT registered trial. The code describes the KIND of study, not its quality. Do not present an M finding as if it were shown in people. - A relation is a claim (source -> effect -> target) with supporting and conflicting studies, boundary conditions, a consensus flag and a human-relevance grade. Quote the boundary when you use a relation. - "Not in the Atlas" means not in this curated corpus, not "not known". Say so. - Cite the study or relation 'url' fields, and the dataset (doi:10.5281/zenodo.22059963) with the dataset_version and corpus_snapshot from atlas_about.

Known tools 11

atlas_about

Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset.

Inferred read-only

search_studies

Search the curated studies by keywords (title, finding, authors, journal, model system), optionally filtered by evidence code, a linked entity (gene, drug, disease.

Inferred read-only

get_study

Full record for one study by Atlas ID (e.

Inferred read-only

search_entities

Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym.

Inferred read-only

get_entity

One entity (gene/protein, complex, drug, disease, process.

Inferred read-only

find_relations

Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1").

Inferred read-only

get_relation

One pathway relation by ID (e.

Inferred read-only

evidence_between

Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies.

Inferred read-only

find_contradictions

Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence.

Inferred read-only

list_questions

The Atlas's open questions (evidence gaps with testable hypotheses) and frontier questions.

Inferred read-only

get_question

One open or frontier question by ID (e.

Inferred read-only

CONNECT WITH APPROVAL

Client installation

Review this server and its permissions before adding it. Secret placeholders must be set locally.

Codex

~/.codex/config.toml

[mcp_servers.mtor-atlas]
url = "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
enabled = true

Claude Code

.mcp.json

{
  "mcpServers": {
    "mtor-atlas": {
      "type": "http",
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}

Claude Desktop

Settings → Connectors → Add custom connector

Name: mtor-atlas
Remote MCP URL: https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp

Add this remote URL as a custom connector in Claude Desktop. Availability depends on the user plan and workspace policy.

Cursor

.cursor/mcp.json

{
  "mcpServers": {
    "mtor-atlas": {
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}

Visual Studio Code

.vscode/mcp.json

Add to Visual Studio Code

{
  "servers": {
    "mtor-atlas": {
      "type": "http",
      "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
    }
  }
}

Generic MCP

Client-specific MCP configuration

{
  "name": "mtor-atlas",
  "transport": "streamable-http",
  "url": "https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp"
}

MCP Inspector

Run the official MCP Inspector locally and enter the indexed Streamable HTTP endpoint.

TRUST AND VERIFICATION EVIDENCE

Trust Data Available

BuiltWith Trust API v2 evidence for workers.dev was fetched 2026-09-25T13:56:19.197Z.

Indexed

Evidence is source-attributed and does not guarantee that a third-party server is safe. Risk labels are conservative metadata heuristics.