INDIVIDUAL MCP TOOL

get_staleness_report

Get writeup staleness report: overall stats, top stale nodes, data source freshness.

biocosm.ionone authenticationAvailability not checked

LIVE ENDPOINT

https://biocosm-mcp.fly.dev/mcp

No auth detected

Connect to this endpoint to inspect the live schema for get_staleness_report and invoke it with your own arguments.

{}

Inferred read-only · medium confidence · heuristic, not a guarantee.

No write-capable action terms were found; this is not proof that invocation has no side effects.

CONNECT WITH APPROVAL

Review this server and its permissions before adding it. Secret placeholders must be set locally.

Codex

~/.codex/config.toml

[mcp_servers.biocosm]
url = "https://biocosm-mcp.fly.dev/mcp"
enabled = true

Claude Code

.mcp.json

{
  "mcpServers": {
    "biocosm": {
      "type": "http",
      "url": "https://biocosm-mcp.fly.dev/mcp"
    }
  }
}

Claude Desktop

Settings → Connectors → Add custom connector

Name: biocosm
Remote MCP URL: https://biocosm-mcp.fly.dev/mcp

Add this remote URL as a custom connector in Claude Desktop. Availability depends on the user plan and workspace policy.

Cursor

.cursor/mcp.json

{
  "mcpServers": {
    "biocosm": {
      "url": "https://biocosm-mcp.fly.dev/mcp"
    }
  }
}

Visual Studio Code

.vscode/mcp.json

Add to Visual Studio Code

{
  "servers": {
    "biocosm": {
      "type": "http",
      "url": "https://biocosm-mcp.fly.dev/mcp"
    }
  }
}

Generic MCP

Client-specific MCP configuration

{
  "name": "biocosm",
  "transport": "streamable-http",
  "url": "https://biocosm-mcp.fly.dev/mcp"
}

MCP Inspector

Run the official MCP Inspector locally and enter the indexed Streamable HTTP endpoint.

search_nodes — Search BioCosm nodes by name, gene symbol, target, therapeutic area, or company.
get_node — Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue history where available (sparse: ~100 drugs, mostly blockbusters, as annualized quarterly estimates; source links when present), probability-of- success predictions for pipeline drugs (with confidence intervals and contributing factors), structured clinical trial outcomes, external cross-references, and writeup availability.
get_writeup — Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score.
list_by_therapeutic_area — List all nodes in a given therapeutic area.
get_company_portfolio — Get a company's full drug/diagnostic portfolio from BioCosm.
get_stats — Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline runs.
get_node_freshness — Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score.
find_by_target — Find all drugs that target a specific gene/protein.