Data Collection

biocosm.io

Provides biomedical knowledge retrieval from BioCosm, including drug, target, and company data.

1 endpoint13 known toolsFirst detected July 25, 2026Last detected August 29, 2026

ENDPOINT 1

https://biocosm-mcp.fly.dev/mcp

No auth detected

MCP server metadata

Name: BioCosm
Version: 3.4.4

Capabilities

experimentalloggingprompts.listChangedresources.listChangedtools.listChangedextensions.io.modelcontextprotocol/ui

Server instructions

Explore thousands of biotech drugs, diagnostics, gene targets, and pipeline compounds. Nodes carry structured metadata; many also have full analytical writeups (summary, mechanism, trial design, probability-of-success estimate, risks, assessment) with citations, and link to targets, companies, revenue, and trial outcomes. Start with search_nodes, then get_node / get_writeup; find_by_phase, find_by_target, and get_company_portfolio handle portfolio queries; get_coverage reports what data is and isn't populated. IMPORTANT - read before relying on anything: BioCosm is an AI-powered, automatically generated research tool. Despite substantial data-quality engineering (cross-source checks, citation verification, deduplication), individual facts may be incomplete, out of date, or outright wrong. Coverage is uneven - e.g. only ~100 drugs have revenue data, and PoS scores cover pipeline drugs. An empty or missing field means 'not in BioCosm's data,' NEVER a real-world zero. Treat everything as a research starting point, verify against primary sources (ClinicalTrials.gov, FDA, SEC filings), and note this is not investment or medical advice.

Known tools 13

search_nodes

Search BioCosm nodes by name, gene symbol, target, therapeutic area, or company.

Inferred read-only

get_node

Get full details for a single BioCosm node: identity and all name aliases, classification, gene targets and mechanism, therapeutic areas, companies, revenue history where available (sparse: ~100 drugs, mostly blockbusters, as annualized quarterly estimates; source links when present), probability-of- success predictions for pipeline drugs (with confidence intervals and contributing factors), structured clinical trial outcomes, external cross-references, and writeup availability.

Inferred read-only

get_writeup

Get the full writeup for a BioCosm node, including all sections, citations, structured data, and validation score.

Inferred read-only

list_by_therapeutic_area

List all nodes in a given therapeutic area.

Inferred read-only

get_company_portfolio

Get a company's full drug/diagnostic portfolio from BioCosm.

Inferred read-only

get_stats

Get a high-level overview of the BioCosm database: total nodes, writeups, companies, breakdowns by type/status/domain, validation scores, and recent pipeline runs.

Inferred read-only

get_staleness_report

Get writeup staleness report: overall stats, top stale nodes, data source freshness.

Inferred read-only

get_node_freshness

Get freshness details for a single node: writeup age, enrichment hash match, staleness score, validation score.

Inferred read-only

find_by_target

Find all drugs that target a specific gene/protein.

Inferred read-only

find_by_phase

List drugs/diagnostics at a specific clinical phase.

Inferred read-only

find_related

Find nodes connected to a given node.

Inferred read-only

get_pos_score

Get the Probability of Success estimate for a node, including the base rate, adjustment factors with reasoning, confidence interval, and model version.

Inferred read-only

get_coverage

Report BioCosm's actual data coverage so you never mistake missing data for a real-world zero.

Inferred read-only

CONNECT WITH APPROVAL

Client installation

Review this server and its permissions before adding it. Secret placeholders must be set locally.

Codex

~/.codex/config.toml

[mcp_servers.biocosm]
url = "https://biocosm-mcp.fly.dev/mcp"
enabled = true

Claude Code

.mcp.json

{
  "mcpServers": {
    "biocosm": {
      "type": "http",
      "url": "https://biocosm-mcp.fly.dev/mcp"
    }
  }
}

Claude Desktop

Settings → Connectors → Add custom connector

Name: biocosm
Remote MCP URL: https://biocosm-mcp.fly.dev/mcp

Add this remote URL as a custom connector in Claude Desktop. Availability depends on the user plan and workspace policy.

Cursor

.cursor/mcp.json

{
  "mcpServers": {
    "biocosm": {
      "url": "https://biocosm-mcp.fly.dev/mcp"
    }
  }
}

Visual Studio Code

.vscode/mcp.json

Add to Visual Studio Code

{
  "servers": {
    "biocosm": {
      "type": "http",
      "url": "https://biocosm-mcp.fly.dev/mcp"
    }
  }
}

Generic MCP

Client-specific MCP configuration

{
  "name": "biocosm",
  "transport": "streamable-http",
  "url": "https://biocosm-mcp.fly.dev/mcp"
}

MCP Inspector

Run the official MCP Inspector locally and enter the indexed Streamable HTTP endpoint.

TRUST AND VERIFICATION EVIDENCE

Trust Data Available

BuiltWith Trust API v2 evidence for fly.dev was fetched 2026-08-25T12:47:23.082Z.

Indexed

Evidence is source-attributed and does not guarantee that a third-party server is safe. Risk labels are conservative metadata heuristics.