INDIVIDUAL MCP TOOL

find_crispr_targets

Find optimal CRISPR guide RNA target sites for a gene.

helix.repairnone authenticationAvailability not checked

Input schema

{}

Inferred read-only · medium confidence · heuristic, not a guarantee.

No write-capable action terms were found; this is not proof that invocation has no side effects.

CONNECT WITH APPROVAL

Review this server and its permissions before adding it. Secret placeholders must be set locally.

Codex

~/.codex/config.toml

[mcp_servers.helix-repair]
url = "https://helix.repair/mcp"
enabled = true

Claude Code

.mcp.json

{
  "mcpServers": {
    "helix-repair": {
      "type": "http",
      "url": "https://helix.repair/mcp"
    }
  }
}

Claude Desktop

Settings → Connectors → Add custom connector

Name: helix-repair
Remote MCP URL: https://helix.repair/mcp

Add this remote URL as a custom connector in Claude Desktop. Availability depends on the user plan and workspace policy.

Cursor

.cursor/mcp.json

{
  "mcpServers": {
    "helix-repair": {
      "url": "https://helix.repair/mcp"
    }
  }
}

Visual Studio Code

.vscode/mcp.json

Add to Visual Studio Code

{
  "servers": {
    "helix-repair": {
      "type": "http",
      "url": "https://helix.repair/mcp"
    }
  }
}

Generic MCP

Client-specific MCP configuration

{
  "name": "helix-repair",
  "transport": "streamable-http",
  "url": "https://helix.repair/mcp"
}

MCP Inspector

Run the official MCP Inspector locally and enter the indexed Streamable HTTP endpoint.

search_gene — Search for a gene by name or symbol.
find_markers — Find topological markers (G-quadruplexes, hairpins, cruciforms, CpG islands, mutation hotspots) for a gene.
analyze_sequence — Analyze a raw DNA sequence for topological complexity (sigma), secondary structures, and CRISPR targets.
get_gene_topology — Get the full sigma map and topological profile for a gene.
compare_mutations — Compare two gene variants and compute the topological difference (delta-sigma).
list_samples — List all genome samples from the 1000 Genomes Project.
get_sample_strata — Get evolutionary strata for a sample.
get_timeline — Get temporal genome blocks for a sample, sorted by void depth (evolutionary time).