Analytics

pipette.bio

Provides access to a bioinformatics knowledge graph for exploring skills, pipelines, and data flows.

1 endpoint6 known toolsFirst detected July 26, 2026Last detected September 7, 2026

ENDPOINT 1

https://skillgraph.pipette.bio/mcp

No auth detected

MCP server metadata

Name: skillgraph
Version: 0.1.0

Capabilities

tools.listChanged

Known tools 6

get_skill

Returns full SKILL.md documentation for a bioinformatics skill, plus its overview, tools, I/O data types, and upstream/downstream connections.

Inferred read-only

list_skills

Lists all available bioinformatics skills in the graph, optionally filtered by a domain keyword (e.g., 'rna-seq', 'variant', 'drug').

Inferred read-only

search_skills

Keyword search across skill IDs, trigger keywords, and tool names.

Inferred read-only

get_transitions

Returns upstream and/or downstream skills connected to a given skill in the pipeline graph, with edge evidence (paper counts, data types, ground truth status).

Inferred read-only

find_path

Finds the shortest pipeline path between two skills, annotated with data flow (what data types pass between each step), paper counts, and evidence.

Inferred read-only

get_graph_stats

Returns summary statistics about the SkillGraph knowledge graph: total skills, edges, literature vs inferred edges, and a breakdown of skills by domain (single-cell, variant analysis, drug discovery, etc.).

Inferred read-only

CONNECT WITH APPROVAL

Client installation

Review this server and its permissions before adding it. Secret placeholders must be set locally.

Codex

~/.codex/config.toml

[mcp_servers.skillgraph]
url = "https://skillgraph.pipette.bio/mcp"
enabled = true

Claude Code

.mcp.json

{
  "mcpServers": {
    "skillgraph": {
      "type": "http",
      "url": "https://skillgraph.pipette.bio/mcp"
    }
  }
}

Claude Desktop

Settings → Connectors → Add custom connector

Name: skillgraph
Remote MCP URL: https://skillgraph.pipette.bio/mcp

Add this remote URL as a custom connector in Claude Desktop. Availability depends on the user plan and workspace policy.

Cursor

.cursor/mcp.json

{
  "mcpServers": {
    "skillgraph": {
      "url": "https://skillgraph.pipette.bio/mcp"
    }
  }
}

Visual Studio Code

.vscode/mcp.json

Add to Visual Studio Code

{
  "servers": {
    "skillgraph": {
      "type": "http",
      "url": "https://skillgraph.pipette.bio/mcp"
    }
  }
}

Generic MCP

Client-specific MCP configuration

{
  "name": "skillgraph",
  "transport": "streamable-http",
  "url": "https://skillgraph.pipette.bio/mcp"
}

MCP Inspector

Run the official MCP Inspector locally and enter the indexed Streamable HTTP endpoint.

TRUST AND VERIFICATION EVIDENCE

Trust Data Available

BuiltWith Trust API v2 evidence for pipette.bio was fetched 2026-08-01T10:33:52.702Z and is being refreshed.

Trust status Trusted

pipette.bio is assessed as Trusted: Domain runs a meaningful technology spend, consistent with a real business.

Indexed

Evidence is source-attributed and does not guarantee that a third-party server is safe. Risk labels are conservative metadata heuristics.