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genomicintelligence.ai

Provides access to genomic sequences from Ensembl for bioinformatics tasks, including model listing and data retrieval.

1 endpoint15 known toolsFirst detected July 28, 2026Last detected August 29, 2026

ENDPOINT 1

https://mcp.genomicintelligence.ai/mcp

No auth detected

MCP server metadata

Name
gi-mcp
Version
0.1.0a17
Capabilities
experimentalpromptsresourcestools
Server instructions

Genomic Intelligence DNA analysis over MCP. Six inference tasks (promoter, splice, enhancer, chromatin, expression, annotation), plus a composite annotation→expression workflow. Research and development use. Not for clinical or diagnostic decisions. For high-volume or latency-sensitive use, contact contact@genomicintelligence.ai to provision a production-shaped deployment. Recommended flow to avoid bloating context with large sequences: 1. Acquire a sequence as a *handle* (fetch_ensembl_sequence, fetch_gene_for_expression, load_local_fasta, or store_inline_sequence). 2. Pass the returned `sequence_ref` to a predict_* tool. Small sequences may instead be passed inline via `sequence`. Each task has its own length bounds (promoter 300, splice 100, enhancer 50, chromatin 200, gene finding 1,000, expression 9,198 bp minimum; 500,000 bp maximum for all of them) — see gi://docs/tasks. A minimum is admission control, not the model's regime: a shorter-than-context-window sequence is still scored, against a padded window, so compare your length with bio_spec.context_window_bp from gi://models before reading much into a short-input result. Reference context lives in resources: gi://models, gi://docs/tasks, gi://sequences, gi://account.

Known tools 15

list_models

List available models for a task.

Inferred read-only
fetch_ensembl_sequence

Fetch a gene's reference sequence from Ensembl and store it.

Inferred read-only
fetch_region

Fetch a genomic region by coordinates from Ensembl and store it.

Inferred read-only
fetch_gene_for_expression

Fetch a gene's sequence prepared for expression prediction.

Inferred read-only
load_demo_sequence

Load a bundled demo reference sequence and return a handle.

Inferred read-only
store_inline_sequence

Store a human-pasted sequence and return a handle to re-use it.

Inferred read-only
predict_promoter

Predict promoter regions (G0).

Inferred read-only
predict_splice

Predict splice donor/acceptor sites (G0 BigBird).

Inferred read-only
predict_enhancer

Predict enhancer activity (G0 DeepSTARR).

Inferred read-only
predict_chromatin

Chromatin annotation across 919 features (G0 DeepSEA).

Inferred read-only
predict_expression

Predict a gene's expression from a TSS-centred window.

Inferred read-only
find_genes

Find genes (transcript intervals) in a genomic region (async, ~8-25s).

Inferred read-only
find_genes_and_predict_expression

Find genes in a sequence, then predict each gene's expression (composite).

Inferred read-only
get_job

Poll an async job once.

Inferred read-only
list_jobs

List the caller's recent async jobs (also available as gi://jobs/recent).

Inferred read-only

CONNECT WITH APPROVAL

Client installation

Review this server and its permissions before adding it. Secret placeholders must be set locally.

Codex

~/.codex/config.toml

[mcp_servers.gi-mcp]
url = "https://mcp.genomicintelligence.ai/mcp"
enabled = true
Claude Code

.mcp.json

{
  "mcpServers": {
    "gi-mcp": {
      "type": "http",
      "url": "https://mcp.genomicintelligence.ai/mcp"
    }
  }
}
Claude Desktop

Settings → Connectors → Add custom connector

Name: gi-mcp
Remote MCP URL: https://mcp.genomicintelligence.ai/mcp

Add this remote URL as a custom connector in Claude Desktop. Availability depends on the user plan and workspace policy.

Cursor

.cursor/mcp.json

{
  "mcpServers": {
    "gi-mcp": {
      "url": "https://mcp.genomicintelligence.ai/mcp"
    }
  }
}
Visual Studio Code

.vscode/mcp.json

Add to Visual Studio Code
{
  "servers": {
    "gi-mcp": {
      "type": "http",
      "url": "https://mcp.genomicintelligence.ai/mcp"
    }
  }
}
Generic MCP

Client-specific MCP configuration

{
  "name": "gi-mcp",
  "transport": "streamable-http",
  "url": "https://mcp.genomicintelligence.ai/mcp"
}
MCP Inspector

Run the official MCP Inspector locally and enter the indexed Streamable HTTP endpoint.

TRUST AND VERIFICATION EVIDENCE

Trust Data Available

BuiltWith Trust API v2 evidence for genomicintelligence.ai was fetched 2026-08-04T03:37:49.065Z and is being refreshed.

Trust status Trusted

genomicintelligence.ai is assessed as Trusted: Domain runs a meaningful technology spend, consistent with a real business.

Indexed

Evidence is source-attributed and does not guarantee that a third-party server is safe. Risk labels are conservative metadata heuristics.